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  1. Lamrabet, O., J. Plumbridge, M. Martin, R. E. Lenski, D. Schneider, and T. Hindré. 2019. Plasticity of promoter-core sequences allows bacteria to compensate for the loss of a key global regulatory gene. Molecular Biology and Evolution 36: 1121-1133. (Paper) [10.5061/dryad.d02sc44]

  2. Maddamsetti, R., and R. E. Lenski. 2018. Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selection. PLOS Genetics 14: e1007199. (Open Access)[10.5061/dryad.3bv80]

  3. Good, B. H., M. J. McDonald, J. E. Barrick, R. E. Lenski, and M. M. Desai. 2017. The dynamics of molecular evolution over 60,000 generations. Nature 551: 45-50. (Abstract)

  4. Couce, A., L. V. Caudwell, C. Feinauer, T. Hindré, J. P. Feugeas, M. Weigt, R. E. Lenski, D. Schneider, and O. Tenaillon. 2017. Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria. Proceedings of the National Academy of Sciences, USA 114: E9026-E9035. (Abstract)[10.5061/dryad.sq67g]

  5. Lenski, R. E. 2017. Convergence and divergence in a long-term experiment with bacteria. American Naturalist 190: S57-S68. (Abstract)

  6. Maddamsetti, R., P. J. Hatcher, A. G. Green, B. L. Williams, D. S. Marks, and R. E. Lenski. 2017. Core genes evolve rapidly in the long-term evolution experiment with Escherichia coli. Genome Biology and Evolution 9: 1072-1083. (Abstract)[10.5061/dryad.2875k.2]

  7. Deatherage, D. E., J. L. Kepner, A. F. Bennett, R. E. Lenski, and J. E. Barrick. 2017. Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures. Proceedings of the National Academy of Sciences, USA 114: E1904–E1912. (OA full text)

  8. Tenaillon, O., J. E. Barrick, N. Ribeck, D. E. Deatherage, J. L. Blanchard, A. Dasgupta, G. C. Wu, S. Wielgoss, S. Cruveiller, C. Médigue, D. Schneider, R. E. Lenski. 2016. Tempo and mode of genome evolution in a 50,000-generation experiment. Nature 536:165-170. (Article)[doi:10.5061/dryad.6226d]

  9. Maddamsetti, R., P. J. Hatcher, S. Cruveiller, C. Médigue, J. E. Barrick, and R. E. Lenski. 2015. Synonymous genetic variation in natural isolates of Escherichia coli does not predict where synonymous substitutions occur in a long-term experiment. Molecular Biology and Evolution 32: 2897-2904. (Abstract)[doi:10.5061/dryad.266g4]

  10. Maddamsetti, R., R. E. Lenski, and J. E. Barrick. 2015. Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli. Genetics 200:619-631. (Abstract)[10.5061/dryad.3m00k]

  11. Raeside, C., J. Gaffé, D. E. Deatherage, O. Tenaillon, A. Briska, R. N. Ptashkin, S. Cruveiller, C. Médigue, R. E. Lenski, J. E. Barrick, and D. Schneider. 2014. Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. mBio 5: e01377-14. (Full Text PDF)[doi:10.5061/dryad.283pp]

  12. Plucain, J., T. Hindré, M. Le Gac, O. Tenaillon, S. Cruveiller, C. Médigue, N. Leiby, W. R. Harcombe, C. J. Marx, R. E. Lenski, D. Schneider. 2014. Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli. Science 343:1366-1369. (Full Text PDF)[doi:10.5061/dryad.12c6b]

  13. Barrick, J. E., and R. E. Lenski. 2013. Genome dynamics during experimental evolution. Nature Reviews Genetics 14:827-839. (Abstract)

  14. Blount, Z. D., J. E. Barrick, C. J. Davidson, and R. E. Lenski. 2012. Genomic analysis of a key innovation in an experimental Escherichia coli population. Nature 489:513-518. (Abstract)[doi:10.5061/dryad.8q6n4]

  15. Meyer, J. R., D. T. Dobias, J. S. Weitz, J. E. Barrick, R. T. Quick, and R. E. Lenski. 2012. Repeatability and contingency in the evolution of a key innovation in phage Lambda. Science 335:428-432. (Abstract)[doi:10.5061/dryad.sh7rm2pt]

  16. Lenski, R. E. 2011. Chance and necessity in the evolution of a bacterial pathogen (News and Views). Nature Genetics 43:1174-1176. (Link)

  17. Wielgoss, S., J. E. Barrick, O. Tenaillon, S. Cruvellier, B. Chane-Woon-Ming, C. Médigue, R. E. Lenski, and D. Schneider. 2011. Mutation rate inferred from synonymous substitutions in a long-term evolution experiment with Escherichia coli. G3: Genes, Genomes, Genetics 1:183-186. (Abstract)

  18. Woods, R. J., J. E. Barrick, T. F. Cooper, U. Shrestha, M. R. Kauth, and R. E. Lenski. 2011. Second-order selection for evolvability in a large Escherichia coli population. Science 331:1433-1436. (Abstract)

  19. Barrick, J. E., and R. E. Lenski. 2009. Genome-wide mutational diversity in an evolving population of Escherichia coli. Cold Spring Harbor Symposia on Quantitative Biology 74:119-129. (Abstract)

  20. Barrick, J. E., D. S. Yu, S. H. Yoon, H. Jeong, T. K. Oh, D. Schneider, R. E. Lenski, and J. F. Kim. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461:1243-1247. (Abstract)

  21. Studier, F. W., P. Daegelen, R. E. Lenski, S. Maslov, and J. F. Kim. 2009. Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomes. Journal of Molecular Biology 394:653-680. (Abstract)

  22. Jeong, H., V. Barbe, C. H. Lee, D. Vallenet, D. S. Yu, S.-H. Choi, A. Couloux, S.-W. Lee, S. H. Yoon, L. Cattolico, C.-G. Hur, H.-S. Park, B. Ségurens, S. C. Kim, T. K. Oh, R. E. Lenski, F. W. Studier, P. Daegelen, and J. F. Kim. 2009. Genome sequences of Escherichia coli B strains REL606 and BL21(DE3). Journal of Molecular Biology 394:644-652. (Abstract)

  23. Daegelen, P., F. W. Studier, R. E. Lenski, S. Cure, and J. F. Kim. 2009. Tracing ancestors and relatives of Escherichia coli B, and the derivation of B strains REL606 and BL21(DE3). Journal of Molecular Biology 394:634-643. (Abstract)

  24. Woods, R., D. Schneider, C. L. Winkworth, M. A. Riley, and R. E. Lenski. 2006. Tests of parallel molecular evolution in a long-term experiment with Escherichia coli. Proceedings of the National Academy of Sciences, USA 103:9107-9112. (PNAS)

  25. Elena, S. F., T. S. Whittam, C. L. Winkworth, M. A. Riley, and R. E. Lenski. 2005. Genomic divergence of Escherichia coli strains: evidence for horizontal transfer and variation in mutation rates. International Microbiology 8:271-278. (PDF file)

  26. Lenski, R. E., C. L. Winkworth, and M. A. Riley. 2003. Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20,000 generations. Journal of Molecular Evolution 56:498-508. (Abstract)(Acrobat file)

  27. Papadopoulos, D., D. Schneider, J. Meier-Eiss, W. Arber, R. E. Lenski, and M. Blot. 1999. Genomic evolution during a 10,000-generation experiment with bacteria. Proceedings of the National Academy of Sciences, USA 96:3807-3812. (Abstract)(Acrobat file)

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