Publication Search Results
- Maddamsetti, R., and R. E. Lenski. 2018. Analysis of bacterial genomes from an evolution experiment with horizontal gene transfer shows that recombination can sometimes overwhelm selection. PLOS Genetics 14: e1007199. (Open Access)[10.5061/dryad.3bv80]
- Good, B. H., M. J. McDonald, J. E. Barrick, R. E. Lenski, and M. M. Desai. 2017. The dynamics of molecular evolution over 60,000 generations. Nature 551: 45-50. (Abstract)
- Couce, A., L. V. Caudwell, C. Feinauer, T. Hindré, J. P. Feugeas, M. Weigt, R. E. Lenski, D. Schneider, and O. Tenaillon. 2017. Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria. Proceedings of the National Academy of Sciences, USA 114: E9026-E9035. (Abstract)[10.5061/dryad.sq67g]
- Tenaillon, O., J. E. Barrick, N. Ribeck, D. E. Deatherage, J. L. Blanchard, A. Dasgupta, G. C. Wu, S. Wielgoss, S. Cruveiller, C. Médigue, D. Schneider, R. E. Lenski. 2016. Tempo and mode of genome evolution in a 50,000-generation experiment. Nature 536:165-170.
(Article)[doi:10.5061/dryad.6226d]
- Lenski, R. E., M. J. Wiser, N. Ribeck, Z. D. Blount, J. R. Nahum, J. J. Morris, L. Zaman, C. B. Turner, B. D. Wade, R. Maddamsetti, A. R. Burmeister, E. J. Baird, J. Bundy, N. A. Grant, K. J. Card, M. Rowles, K. Weatherspoon, S. E. Papoulis, R. Sullivan, C. Clark, J. S. Mulka, and N. Hajela. 2015. Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli. Proceedings of the Royal Society, London B 282:20152292. (Article)[doi:10.5061/dryad.gd3dq]
- Maddamsetti, R., P. J. Hatcher, S. Cruveiller, C. Médigue, J. E. Barrick, and R. E. Lenski. 2015. Synonymous genetic variation in natural isolates of Escherichia coli does not predict where synonymous substitutions occur in a long-term experiment. Molecular Biology and Evolution 32: 2897-2904. (Abstract)[doi:10.5061/dryad.266g4]
- Raeside, C., J. Gaffé, D. E. Deatherage, O. Tenaillon, A. Briska, R. N. Ptashkin, S. Cruveiller, C. Médigue, R. E. Lenski, J. E. Barrick, and D. Schneider. 2014. Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli. mBio 5: e01377-14. (Full Text PDF)[doi:10.5061/dryad.283pp]
- Wiser, M. J., N. Ribeck, and R. E. Lenski. 2013. Long-term dynamics of adaptation in asexual populations. Science 342:1364-1367. (Full Text PDF)[doi:10.5061/dryad.0hc2m]
- Wielgoss, S., J. E. Barrick, O. Tenaillon, M. J. Wiser, W. J. Dittmar, S. Cruveiller, B. Chane-Woon-Ming, C. Médigue, R. E. Lenski, and D. Schneider. 2013. Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load. Proceedings of the National Academy of Sciences, USA 110:222-227.
(Abstract)[doi:10.5061/dryad.hb3b5]
- Wielgoss, S., J. E. Barrick, O. Tenaillon, S. Cruvellier, B. Chane-Woon-Ming, C. Médigue, R. E. Lenski, and D. Schneider. 2011. Mutation rate inferred from synonymous substitutions in a long-term evolution experiment with Escherichia coli. G3: Genes, Genomes, Genetics 1:183-186. (Abstract)
- Barrick, J. E., and R. E. Lenski. 2009. Genome-wide mutational diversity in an evolving population of Escherichia coli. Cold Spring Harbor Symposia on Quantitative Biology 74:119-129. (Abstract)
- Barrick, J. E., D. S. Yu, S. H. Yoon, H. Jeong, T. K. Oh, D. Schneider, R. E. Lenski, and J. F. Kim. 2009. Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461:1243-1247. (Abstract)
- Lenski, R. E. 2009. Lederberg, Joshua (biographical essay). Pp. 678-680 in M. Ruse and J. Travis, eds. Evolution: The First Four Billion Years. Harvard University Press, Cambridge, Mass. (Publisher)
- Clune, J., D. Misevic, C. Ofria, R. E. Lenski, S. F. Elena, and R. Sanjuán. 2008. Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes. PLoS Computational Biology 4:e1000187 [8 pp]. (Article)
- Blount, Z. D., C. Z. Borland, and R. E. Lenski. 2008. Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proceedings of the National Academy of Sciences, USA 105:7899-7906. (Abstract)(Acrobat file)
- Elena, S. F., C. O. Wilke, C. Ofria, and R. E. Lenski. 2007. Effects of population size and mutation rate on the evolution of mutational robustness. Evolution 61:666-674. (Abstract)
- Elena, S. F., T. S. Whittam, C. L. Winkworth, M. A. Riley, and R. E. Lenski. 2005. Genomic divergence of Escherichia coli strains: evidence for horizontal transfer and variation in mutation rates. International Microbiology 8:271-278. (PDF file)
- Lenski, R. E., and P. Keim. 2005. Population genetics of bacteria in a forensic context. Pp. 355-369 in R. G. Breeze, B. Budowle, and S. E. Schutzer, editors. Microbial Forensics. Elsevier Academic Press, San Diego, California. (Publisher)(Acrobat file)
- Misevic, D., R. E. Lenski, and C. Ofria. 2004. Sexual reproduction and Muller's ratchet in digital organisms. Pp. 340-345 in J. Pollack, M. Bedau, P. Husbands, T. Ikegami, and R. A. Watson, eds. Artificial Life IX: Proceedings of the Ninth International Conference on the Simulation and Synthesis of Living Systems. MIT Press, Cambridge, Massachusetts. (Acrobat file)
- Lenski, R. E. 2004. The future of evolutionary biology. Ludus Vitalis (special issue honoring Ernst Mayr on his 100th birthday) 12:67-89. (Acrobat file)
- Lenski, R. E. 2001. Come fly, and leave the baggage behind (Perspective). Science 294:533-534. (Reprint)(Acrobat file)
- Wilke, C. O, J. Wang, C. Ofria, R. E. Lenski, and C. Adami. 2001. Evolution of digital organisms at high mutation rate leads to survival of the flattest. Nature 412:331-333. (Abstract)(Acrobat file)
- Vulic, M., R. E. Lenski, and M. Radman. 1999. Mutation, recombination and incipient speciation of bacteria in the laboratory. Proceedings of the National Academy of Sciences, USA 96:7348-7351. (Abstract)(Acrobat file)
- De Visser, J. A. G. M., C. W. Zeyl, P. J. Gerrish, J. L. Blanchard, and R. E. Lenski. 1999. Diminishing returns from mutation supply rate in asexual populations. Science 283:404-406. (Abstract)(Acrobat file)
- Moxon, E. R., P. B. Rainey, and R. E. Lenski. 1998. Mutability and variability in disease (Letter). Perspectives in Biology and Medicine 42:154-155.
- Sniegowski, P. D., P. J. Gerrish, and R. E. Lenski. 1997. Evolution of high mutation rates in experimental populations of Escherichia coli. Nature 387:703-705.
(Abstract)(Acrobat file)
- Sniegowski, P. D., and R. E. Lenski. 1995. Mutation and adaptation: the directed mutation controversy in evolutionary perspective. Annual Review of Ecology and Systematics 26:553-578. (Abstract)(Acrobat file)
- Lenski, R. E., and P. D. Sniegowski. 1995. "Adaptive mutation": the debate goes on (Letter). Science 269:285-286. (Abstract)
- Lenski, R. E., and P. D. Sniegowski. 1995. Directed mutations slip-sliding away? Current Biology 5:97-99. (Abstract)
- Moxon, E. R., P. B. Rainey, M. A. Nowak, and R. E. Lenski. 1994. Adaptive evolution of highly mutable loci in pathogenic bacteria. Current Biology 4:24-33. (Article)
- Lenski, R. E., and J. E. Mittler. 1993. Whither directed mutation? (Letter). Science 262:318-319.
- Lenski, R. E., and J. E. Mittler. 1993. Unusual mutational mechanisms and evolution (Technical Comment). Science 260:1959-1960.
- Lenski, R. E., and J. E. Mittler. 1993. Directed mutation (Letter). Science 260:1222-1224.
- Lenski, R. E., and J. E. Mittler. 1993. The directed mutation controversy and neo-Darwinism. Science 259:188-194.
(Abstract)(Acrobat file)
- Mittler, J. E., and R. E. Lenski. 1992. Experimental evidence for an alternative to directed mutation in the bgl operon. Nature 356:446-448. (Abstract)
- Mittler, J. E., and R. E. Lenski. 1990. Causes of mutation and Mu excision (Scientific Correspondence). Nature 345:213.
- Mittler, J. E., and R. E. Lenski. 1990. New data on excisions of Mu from E. coli MCS2 cast doubt on directed mutation hypothesis. Nature 344:173-175. (Abstract)(Acrobat file)
- Lenski, R. E., M. Slatkin, and F. J. Ayala. 1989. Mutation and selection in bacterial populations: alternatives to the hypothesis of directed mutation. Proceedings of the National Academy of Sciences, USA 86:2775-2778. (Abstract)(Acrobat file)
- Lenski, R. E. 1989. Are some mutations directed? Trends in Ecology and Evolution 4:148-150. (Acrobat file)
- Lenski, R. E., M. Slatkin, and F. J. Ayala. 1989. Another alternative to directed mutation (Scientific Correspondence). Nature 337:123-124. (Abstract)
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