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  1. Card, K. J., T. LaBar, J. B. Gomez, and R. E. Lenski. 2019. Historical contingency in the evolution of antibiotic resistance after decades of relaxed selection. PLOS Biology, in press. (Open access) [doi:10.5061/dryad.g41hg96]

  2. Burmeister, A. R., and R. E. Lenski. 2018. Specifying the harsh conditions of life: resource competition and predation in the 1970s. American Naturalist 91: 87-89. (Open Access)

  3. Deatherage, D. E., J. L. Kepner, A. F. Bennett, R. E. Lenski, and J. E. Barrick. 2017. Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures. Proceedings of the National Academy of Sciences, USA 114: E1904–E1912. (OA full text)

  4. Meyer, J. R., D. T. Dobias, S. J. Medina, L. Servilio, A. Gupta, and R. E. Lenski. 2016. Ecological speciation of bacteriophage Lambda in allopatry and sympatry. Science 354:1301-1304. (Abstract)[10.5061/dryad.4qb79]

  5. Grosskopf, T., J. Consuegra, J. Gaffé, J. Willison, R. E. Lenski, O. S. Soyer, and D. Schneider. 2016. Metabolic modelling in a dynamic evolutionary framework predicts adaptive diversification of bacteria in a long-term evolution experiment. BMC Evolutionary Biology 16:163. (Article)

  6. Turner, C. B., Z. D. Blount, and R. E. Lenski. 2015. Replaying evolution to test the cause of extinction of one ecotype in an experimentally evolved population. PLOS ONE 10: e0142050. (Article)[doi:10.5061/dryad.vf896]

  7. Maddamsetti, R., R. E. Lenski, and J. E. Barrick. 2015. Adaptation, clonal interference, and frequency-dependent interactions in a long-term evolution experiment with Escherichia coli. Genetics 200:619-631. (Abstract)[10.5061/dryad.3m00k]

  8. Ostrowski, E. A., C. Ofria, and R. E. Lenski. 2015. Genetically integrated traits and rugged adaptive landscapes in digital organisms. BMC Evolutionary Biology 15:83. (Article)[10.5061/dryad.hh650]

  9. Ribeck, N., and R. E. Lenski. 2015. Modeling and quantifying frequency-dependent fitness in microbial populations with cross-feeding interactions. Evolution 69:1313-1320. (Abstract)[doi:10.5061/dryad.vm752]

  10. Wray, G. A., H. E. Hoekstra, D. J. Futuyma, R. E. Lenski, T. F. C. Mackay, D. Schluter, and J. E. Strassmann. 2014. Does evolutionary theory need a rethink? No all is well. (Counterpoint) Nature 514:161-164. (Article)

  11. Morris, J. J., S. E. Papoulis, and R. E. Lenski. 2014. Coexistence of evolving bacteria stabilized by a shared Black Queen function. Evolution 68:2960-2971. (Abstract)[doi:10.5061/dryad.2753k]

  12. Plucain, J., T. Hindré, M. Le Gac, O. Tenaillon, S. Cruveiller, C. Médigue, N. Leiby, W. R. Harcombe, C. J. Marx, R. E. Lenski, D. Schneider. 2014. Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli. Science 343:1366-1369. (Full Text PDF)[doi:10.5061/dryad.12c6b]

  13. Le Gac, M., J. Plucain, T. Hindré, R. E. Lenski, and D. Schneider. 2012. Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with Escherichia coli. Proceedings of the National Academy of Sciences, USA 109:9487-9492. (Abstract)[doi:10.5061/dryad.d7k5r5d2]

  14. Barrick, J. E., M. R. Kauth, C. C. Strelioff, and R. E. Lenski. 2010. Escherichia coli rpoB mutants have increased evolvability in proportion to their fitness defects. Molecular Biology and Evolution 27:1338-1347. (Abstract)

  15. Misevic, D., C. Ofria, and R. E. Lenski. 2010. Experiments with digital organisms on the origin and maintenance of sex in changing environments. Journal of Heredity 101:S46-S54. (Abstract)

  16. Cooper, T. F., and R. E. Lenski. 2010. Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations. BMC Evolutionary Biology 10:11 [10 pp]. (Abstract)

  17. Yedid, G., C. A. Ofria, and R. E. Lenski. 2009. Selective press extinctions, but not random pulse extinctions, cause delayed ecological recovery in communities of digital organisms. American Naturalist 173:E139–E154. (Abstract)[doi:10.5061/dryad.1212]

  18. Rozen, D. E., N. Philippe, J. A. de Visser, R. E. Lenski, and D. Schneider. 2009. Death and cannibalism in a seasonal environment facilitate bacterial coexistence. Ecology Letters 12:34-44. (Abstract)

  19. Hillesland, K. L., G. J. Velicer, and R. E. Lenski. 2009. Experimental evolution of a microbial predator’s ability to find prey. Proceedings of the Royal Society, London B 276:459–467. (Abstract)

  20. Sleight, S. C., C. Orlic, D. Schneider, and R. E. Lenski. 2008. Genetic basis of evolutionary adaptation by Escherichia coli to stressful cycles of freezing, thawing and growth. Genetics 180:431-443. (Abstract)

  21. Yedid, G., C. A. Ofria, and R. E. Lenski. 2008. Historical and contingent factors affect re-evolution of a complex feature lost during mass extinction in communities of digital organisms. Journal of Evolutionary Biology 21:1335-1357. (Abstract)

  22. Blount, Z. D., C. Z. Borland, and R. E. Lenski. 2008. Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proceedings of the National Academy of Sciences, USA 105:7899-7906. (Abstract)(Acrobat file)

  23. Sleight, S. C, and R. E. Lenski. 2007. Evolutionary adaptation to freeze-thaw-growth cycles in Escherichia coli. Physiological and Biochemical Zoology 80:370-385. (Abstract)

  24. Bennett, A. F., and R. E. Lenski. 2007. An experimental test of evolutionary trade-offs during temperature adaptation. Proceedings of the National Academy of Sciences, USA 104:8649-8654. (Abstract)

  25. Ostrowski, E. A., C. Ofria, and R. E. Lenski. 2007. Ecological specialization and adaptive decay in digital organisms. American Naturalist 169:E1-E20. (Abstract)

  26. Sleight, S. C, N. S. Wigginton, and R. E. Lenski. 2006. Increased susceptibility to repeated freeze-thaw cycles in Escherichia coli following long-term evolution in a benign environment. BMC Evolutionary Biology 6:104 [8 pp]. (Abstract)

  27. Ostrowski, E. A., D. E. Rozen, and R. E. Lenski. 2005. Pleiotropic effects of beneficial mutations in Escherichia coli. Evolution 59:2343-2352. (Abstract)

  28. Eldredge, N., J. N. Thompson, P. M. Brakefield, S. Gavrilets, D. Jablonski, J. B. C. Jackson, R. E. Lenski, B. S. Lieberman, M. A. McPeek, and W. Miller III. 2005. The dynamics of evolutionary stasis. Paleobiology 31:133-145.

  29. Remold, S. K., and R. E. Lenski. 2004. Pervasive joint influence of epistasis and plasticity on mutational effects in Escherichia coli. Nature Genetics 36:423-426. (Nature Genetics)(Acrobat file)

  30. Riehle, M. R., A. F. Bennett, R. E. Lenski, and A. D. Long. 2003. Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature. Physiological Genomics 14:47-58. (Abstract)

  31. Cullum, A. J., A. F. Bennett, and R. E. Lenski. 2001. Evolutionary adaptation to temperature. IX. Preadaptation to novel stressful environments by E. coli adapted to high temperature. Evolution 55:2194-2202. (Abstract)(Acrobat file)

  32. Remold, S. K., and R. E. Lenski. 2001. Contribution of individual random mutations to genotype-by-environment interactions in Escherichia coli. Proceedings of the National Academy of Sciences, USA 98:11388-11393. (Abstract)(Acrobat file)

  33. Lenski, R. E. 2001. Testing Antonovics' five tenets of ecological genetics: experiments with bacteria at the interface of ecology and genetics. Pp. 25-45 in M. C. Press, N. Huntly, and S. Levin, eds. Ecology: Achievement and Challenge. Blackwell Science, Oxford. (Acrobat file)

  34. Cooper, V. S., A. F. Bennett, and R. E. Lenski. 2001. Evolution of thermal dependence of growth rate of Escherichia coli populations during 20,000 generations in a constant environment. Evolution 55:889-896. (Abstract)(Acrobat file)

  35. Bronikowski, A. M., A. F. Bennett, and R. E. Lenski. 2001. Evolutionary adaptation to temperature. VIII. Effects of temperature on growth rate in natural isolates of Escherichia coli and Salmonella enterica from different thermal environments. Evolution 55:33-40. (Abstract)(Acrobat file)

  36. Bennett, A. F., and R. E. Lenski. 1999. Experimental evolution and its role in evolutionary physiology. American Zoologist 39:346-362. (Acrobat file)

  37. Mongold, J. A., A. F. Bennett, and R. E. Lenski. 1999. Evolutionary adaptation to temperature. VII. Extension of the upper thermal limit of Escherichia coli. Evolution 53:386-394. (Abstract)(Acrobat file)

  38. Bennett, A. F., and R. E. Lenski. 1997. Phenotypic and evolutionary adaptation of a model bacterial system to stressful thermal environments. Pp. 135-154 in R. Bijlsma and V. Loeschcke, eds. Environmental Stress, Adaptation and Evolution (Birkhäuser, Basel, Switzerland). (PDF link)

  39. Bennett, A. F., and R. E. Lenski. 1997. Evolutionary adaptation to temperature. VI. Phenotypic acclimation and its evolution in Escherichia coli. Evolution 51:36-44. (Abstract)(Acrobat file)

  40. Mongold, J. A., A. F. Bennett, and R. E. Lenski. 1996. Experimental investigations of evolutionary adaptation to temperature. Pp. 239-264 in I. A. Johnston and A. F. Bennett, eds. Animals and Temperature: Phenotypic and Evolutionary Adaptation (Society for Experimental Biology Seminar Series 59). Cambridge University Press, Cambridge. (PDF link)

  41. Bennett, A. F., and R. E. Lenski. 1996. Evolutionary adaptation to temperature. V. Adaptive mechanisms and correlated responses in experimental lines of Escherichia coli. Evolution 50:493-503. (Abstract)(Acrobat file)

  42. Mongold, J. A., A. F. Bennett, and R. E. Lenski. 1996. Evolutionary adaptation to temperature. IV. Adaptation of Escherichia coli at a niche boundary. Evolution 50:35-43. (Abstract)(Acrobat file)

  43. Travisano, M., J. A. Mongold, A. F. Bennett, and R. E. Lenski. 1995. Experimental tests of the roles of adaptation, chance, and history in evolution. Science 267:87-90. (Abstract)(Acrobat file)

  44. Leroi, A. M., R. E. Lenski, and A. F. Bennett. 1994. Evolutionary adaptation to temperature. III. Adaptation of Escherichia coli to a temporally varying environment. Evolution 48:1222-1229. (Abstract)(Acrobat file)

  45. Leroi, A. M., A. F. Bennett, and R. E. Lenski. 1994. Temperature acclimation and competitive fitness: an experimental test of the beneficial acclimation assumption. Proceedings of the National Academy of Sciences, USA 91:1917-1921. (Abstract)(Acrobat file)

  46. Lenski, R. E., and A. F. Bennett. 1993. Evolutionary response of Escherichia coli to thermal stress. American Naturalist 142:S47-S64. (Abstract)(Acrobat file)

  47. Bennett, A. F., and R. E. Lenski. 1993. Evolutionary adaptation to temperature. II. Thermal niches of experimental lines of Escherichia coli. Evolution 47:1-12. (Abstract)(Acrobat file)

  48. Bennett, A. F., R. E. Lenski, and J. E. Mittler. 1992. Evolutionary adaptation to temperature. I. Fitness responses of Escherichia coli to changes in its thermal environment. Evolution 46:16-30. (Abstract)(Acrobat file)

  49. Bennett, A. F., K. M. Dao, and R. E. Lenski. 1990. Rapid evolution in response to high temperature selection. Nature 346:79-81. (PDF link)

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